HL_9TV2_043
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UCAAACGGUA(6MZ)CG
- Length
- 13 nucleotides
- Bulged bases
- 9TV2|1|L5|A|4200, 9TV2|1|L5|C|4207
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TV2_043 not in the Motif Atlas
- Homologous match to HL_8GLP_060
- Geometric discrepancy: 0.0373
- The information below is about HL_8GLP_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.4
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9TV2|1|L5|U|4196
9TV2|1|L5|C|4197
9TV2|1|L5|A|4198
9TV2|1|L5|A|4199
9TV2|1|L5|A|4200
9TV2|1|L5|C|4201
9TV2|1|L5|G|4202
9TV2|1|L5|G|4203
9TV2|1|L5|U|4204
9TV2|1|L5|A|4205
9TV2|1|L5|6MZ|4206
9TV2|1|L5|C|4207
9TV2|1|L5|G|4208
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- 60S ribosomal protein L10-like
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
Coloring options: