HL_9TV2_053
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- C(PSU)GAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9TV2|1|L5|G|4680, 9TV2|1|L5|C|4684
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|C|4674
9TV2|1|L5|PSU|4675
9TV2|1|L5|G|4676
9TV2|1|L5|A|4677
9TV2|1|L5|A|4678
9TV2|1|L5|C|4679
9TV2|1|L5|G|4680
9TV2|1|L5|C|4681
9TV2|1|L5|C|4682
9TV2|1|L5|U|4683
9TV2|1|L5|C|4684
9TV2|1|L5|U|4685
9TV2|1|L5|A|4686
9TV2|1|L5|A|4687
9TV2|1|L5|G|4688
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L9
- Chain LO
- 60S ribosomal protein L13a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
Coloring options: