HL_9TV2_056

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9TV2|1|L5|U|4961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TV2|1|L5|G|4960
9TV2|1|L5|U|4961
9TV2|1|L5|A|4962
9TV2|1|L5|G|4963
9TV2|1|L5|A|4964
9TV2|1|L5|C|4965
9TV2|1|L5|G|4966
9TV2|1|L5|A|4967
9TV2|1|L5|C|4968

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17