HL_9TZ9_012

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9TZ9|1|a|G|391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ9_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3589

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TZ9|1|a|A|387
9TZ9|1|a|C|388
9TZ9|1|a|A|389
9TZ9|1|a|C|390
9TZ9|1|a|G|391
9TZ9|1|a|U|392
9TZ9|1|a|G|393
9TZ9|1|a|G|394
9TZ9|1|a|U|395
9TZ9|1|a|A|396
9TZ9|1|a|U|397

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL28