HL_9TZ9_020

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

9TZ9|1|a|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ9_020 not in the Motif Atlas

Geometric match to HL_9DFE_019

Geometric discrepancy: 0.1982

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9TZ9|1|a|C|648
9TZ9|1|a|G|649
9TZ9|1|a|A|650
9TZ9|1|a|A|651
9TZ9|1|a|A|652
9TZ9|1|a|U|653
9TZ9|1|a|G|654

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain z

Large ribosomal subunit protein bL35