HL_9TZ9_026

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

(PSU)GAUAAGG

Length

8 nucleotides

Bulged bases

9TZ9|1|a|U|964, 9TZ9|1|a|G|967

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ9_026 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1778

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9TZ9|1|a|PSU|961
9TZ9|1|a|G|962
9TZ9|1|a|A|963
9TZ9|1|a|U|964
9TZ9|1|a|A|965
9TZ9|1|a|A|966
9TZ9|1|a|G|967
9TZ9|1|a|G|968

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Z

Coxiellacae Large Subunit Peptide (CLaSP)

Chain b

5S ribosomal RNA; 5S rRNA

Chain s

Large ribosomal subunit protein uL16