HL_9TZ9_038

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9TZ9|1|a|A|1629, 9TZ9|1|a|A|1631, 9TZ9|1|a|A|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ9_038 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0862

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9TZ9|1|a|C|1627
9TZ9|1|a|G|1628
9TZ9|1|a|A|1629
9TZ9|1|a|C|1630
9TZ9|1|a|A|1631
9TZ9|1|a|C|1632
9TZ9|1|a|A|1633
9TZ9|1|a|G|1634

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain j

Large ribosomal subunit protein uL22

Chain y

Large ribosomal subunit protein bL34