HL_9TZE_006

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

9TZE|1|A|G|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_006 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.2665

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9TZE|1|A|G|256
9TZE|1|A|G|257
9TZE|1|A|U|258
9TZE|1|A|A|259
9TZE|1|A|A|260
9TZE|1|A|U|261
9TZE|1|A|G|262
9TZE|1|A|G|263
9TZE|1|A|C|264

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20