HL_9TZE_008

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1299

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TZE|1|A|G|317
9TZE|1|A|A|318
9TZE|1|A|C|319
9TZE|1|A|U|320
9TZE|1|A|G|321
9TZE|1|A|A|322
9TZE|1|A|G|323
9TZE|1|A|A|324
9TZE|1|A|C|325
9TZE|1|A|A|326
9TZE|1|A|C|327
9TZE|1|A|G|328
9TZE|1|A|G|329
9TZE|1|A|C|330

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20