HL_9TZE_065

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9TZE|1|a|U|1406, 9TZE|1|a|U|1407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_065 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3509

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9TZE|1|a|G|1399
9TZE|1|a|U|1400
9TZE|1|a|U|1401
9TZE|1|a|A|1402
9TZE|1|a|A|1403
9TZE|1|a|U|1404
9TZE|1|a|A|1405
9TZE|1|a|U|1406
9TZE|1|a|U|1407
9TZE|1|a|C|1408

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL23