HL_9TZE_078

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

G(PSU)AACUA(PSU)AAC

Length

11 nucleotides

Bulged bases

9TZE|1|a|A|1929

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_078 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.1151

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9TZE|1|a|G|1926
9TZE|1|a|PSU|1927
9TZE|1|a|A|1928
9TZE|1|a|A|1929
9TZE|1|a|C|1930
9TZE|1|a|U|1931
9TZE|1|a|A|1932
9TZE|1|a|PSU|1933
9TZE|1|a|A|1934
9TZE|1|a|A|1935
9TZE|1|a|C|1936

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 9

Ribosome hibernation promoting factor

Chain A

Small subunit ribosomal RNA; SSU rRNA