HL_9TZE_083

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9TZE|1|a|G|2266

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_083 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0926

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9TZE|1|a|C|2264
9TZE|1|a|U|2265
9TZE|1|a|G|2266
9TZE|1|a|OMG|2267
9TZE|1|a|G|2268
9TZE|1|a|G|2269
9TZE|1|a|C|2270
9TZE|1|a|G|2271
9TZE|1|a|G|2272

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL27

Chain s

Large ribosomal subunit protein uL16