HL_9TZE_087

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUGACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_087 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.2587

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9TZE|1|a|C|2371
9TZE|1|a|U|2372
9TZE|1|a|G|2373
9TZE|1|a|A|2374
9TZE|1|a|C|2375
9TZE|1|a|A|2376
9TZE|1|a|A|2377
9TZE|1|a|G|2378

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL27

Chain k

Large ribosomal subunit protein uL15

Chain z

Large ribosomal subunit protein bL35