HL_9UWH_038

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

9UWH|1|AA|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UWH_038 not in the Motif Atlas

Homologous match to HL_6CZR_072

Geometric discrepancy: 0.2068

The information below is about HL_6CZR_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.4

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9UWH|1|AA|U|654
9UWH|1|AA|U|655
9UWH|1|AA|U|656
9UWH|1|AA|G|657
9UWH|1|AA|G|658
9UWH|1|AA|U|659
9UWH|1|AA|C|660
9UWH|1|AA|C|661
9UWH|1|AA|U|662
9UWH|1|AA|A|663
9UWH|1|AA|G|664

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS5m

Chain Az

mRNA