HL_9UWH_041

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UWH_041 not in the Motif Atlas

Geometric match to HL_8CRE_222

Geometric discrepancy: 0.1421

The information below is about HL_8CRE_222

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9UWH|1|AA|A|768
9UWH|1|AA|G|769
9UWH|1|AA|C|770
9UWH|1|AA|A|771
9UWH|1|AA|A|772
9UWH|1|AA|U|773

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AL

Small ribosomal subunit protein uS15m

Chain AN

Small ribosomal subunit protein uS17m