HL_9UWH_055

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUGAAACUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UWH_055 not in the Motif Atlas

Geometric match to HL_4WJ4_003

Geometric discrepancy: 0.233

The information below is about HL_4WJ4_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9UWH|1|AA|A|1399
9UWH|1|AA|U|1400
9UWH|1|AA|G|1401
9UWH|1|AA|A|1402
9UWH|1|AA|A|1403
9UWH|1|AA|A|1404
9UWH|1|AA|C|1405
9UWH|1|AA|U|1406
9UWH|1|AA|U|1407

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS14m

Chain AZ

Small ribosomal subunit protein mS33

Chain m

Large ribosomal subunit protein mL55