HL_9VVI_008

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9VVI|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VVI_008 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.1167

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

9VVI|1|A|C|342
9VVI|1|A|U|343
9VVI|1|A|A|344
9VVI|1|A|C|345
9VVI|1|A|G|346
9VVI|1|A|G|347

Current chains

Chain A

16S rRNA

Nearby chains

Chain j

50S ribosomal protein L14

Chain o

Large ribosomal subunit protein bL19