HL_9VVI_012
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CAGCC(G7M)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_012 not in the Motif Atlas
- Homologous match to HL_6CZR_216
- Geometric discrepancy: 0.2458
- The information below is about HL_6CZR_216
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_02837.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9VVI|1|A|C|522
9VVI|1|A|A|523
9VVI|1|A|G|524
9VVI|1|A|C|525
9VVI|1|A|C|526
9VVI|1|A|G7M|527
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: