HL_9VVI_020
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 9VVI|1|A|G|971
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_020 not in the Motif Atlas
- Homologous match to HL_6CZR_092
- Geometric discrepancy: 0.2932
- The information below is about HL_6CZR_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9VVI|1|A|G|963
9VVI|1|A|A|964
9VVI|1|A|U|965
9VVI|1|A|2MG|966
9VVI|1|A|5MC|967
9VVI|1|A|A|968
9VVI|1|A|A|969
9VVI|1|A|C|970
9VVI|1|A|G|971
9VVI|1|A|C|972
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain M
- Small ribosomal subunit protein uS13
- Chain Y
- Transfer RNA; tRNA
- Chain Z
- Transfer RNA; tRNA
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