HL_9VVI_032
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CAGCUUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 9VVI|1|Y|C|16, 9VVI|1|Y|U|17, 9VVI|1|Y|U|18, 9VVI|1|Y|G|19, 9VVI|1|Y|G|20, 9VVI|1|Y|H2U|21
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_032 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.1195
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9VVI|1|Y|C|13
9VVI|1|Y|A|14
9VVI|1|Y|G|15
9VVI|1|Y|C|16
9VVI|1|Y|U|17
9VVI|1|Y|U|18
9VVI|1|Y|G|19
9VVI|1|Y|G|20
9VVI|1|Y|H2U|21
9VVI|1|Y|A|22
9VVI|1|Y|G|23
Current chains
- Chain Y
- A-site tRNA (prolyl-tRNAPro)
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: