HL_9VVI_034
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- G(5MU)(PSU)CGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_034 not in the Motif Atlas
- Homologous match to HL_5WT1_003
- Geometric discrepancy: 0.1143
- The information below is about HL_5WT1_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9VVI|1|Y|G|54
9VVI|1|Y|5MU|55
9VVI|1|Y|PSU|56
9VVI|1|Y|C|57
9VVI|1|Y|G|58
9VVI|1|Y|A|59
9VVI|1|Y|A|60
9VVI|1|Y|U|61
9VVI|1|Y|C|62
Current chains
- Chain Y
- A-site tRNA (prolyl-tRNAPro)
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: