HL_9VVI_049
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- ACACGUGGUAU
- Length
- 11 nucleotides
- Bulged bases
- 9VVI|1|a|G|386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_049 not in the Motif Atlas
- Homologous match to HL_7A0S_013
- Geometric discrepancy: 0.3194
- The information below is about HL_7A0S_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.8
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9VVI|1|a|A|382
9VVI|1|a|C|383
9VVI|1|a|A|384
9VVI|1|a|C|385
9VVI|1|a|G|386
9VVI|1|a|U|387
9VVI|1|a|G|388
9VVI|1|a|G|389
9VVI|1|a|U|390
9VVI|1|a|A|391
9VVI|1|a|U|392
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: