HL_9VVI_052

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9VVI|1|a|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VVI_052 not in the Motif Atlas

Homologous match to HL_7A0S_016

Geometric discrepancy: 0.1916

The information below is about HL_7A0S_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9VVI|1|a|C|487
9VVI|1|a|G|488
9VVI|1|a|G|489
9VVI|1|a|C|490
9VVI|1|a|G|491
9VVI|1|a|A|492
9VVI|1|a|G|493

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L22