HL_9VVI_053

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9VVI|1|a|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VVI_053 not in the Motif Atlas

Homologous match to HL_7A0S_017

Geometric discrepancy: 0.4954

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.5

Basepair signature

cWW-F

Number of instances in this motif group

42

Unit IDs

9VVI|1|a|C|544
9VVI|1|a|U|545
9VVI|1|a|U|546
9VVI|1|a|A|547
9VVI|1|a|G|548
9VVI|1|a|G|549

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L21