HL_9VVI_054
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9VVI|1|a|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_054 not in the Motif Atlas
- Homologous match to HL_7A0S_018
- Geometric discrepancy: 0.1604
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9VVI|1|a|U|566
9VVI|1|a|U|567
9VVI|1|a|U|568
9VVI|1|a|U|569
9VVI|1|a|G|570
9VVI|1|a|U|571
9VVI|1|a|A|572
9VVI|1|a|U|573
9VVI|1|a|A|574
9VVI|1|a|A|575
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- 50S ribosomal protein L21
- Chain z
- Large ribosomal subunit protein bL32
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