HL_9VVI_059

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

U(1MG)(PSU)(5MU)GAAAAA

Length

10 nucleotides

Bulged bases

9VVI|1|a|5MU|747, 9VVI|1|a|A|751, 9VVI|1|a|A|752

QA status

Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VVI_059 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1058

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9VVI|1|a|U|744
9VVI|1|a|1MG|745
9VVI|1|a|PSU|746
9VVI|1|a|5MU|747
9VVI|1|a|G|748
9VVI|1|a|A|749
9VVI|1|a|A|750
9VVI|1|a|A|751
9VVI|1|a|A|752
9VVI|1|a|A|753

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain d

50S ribosomal protein L3

Chain r

50S ribosomal protein L22

Chain z

Large ribosomal subunit protein bL32