HL_9VVI_086
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GUAAUCC
- Length
- 7 nucleotides
- Bulged bases
- 9VVI|1|a|A|2211, 9VVI|1|a|U|2213
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_086 not in the Motif Atlas
- Geometric match to HL_8B0X_079
- Geometric discrepancy: 0.0942
- The information below is about HL_8B0X_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33632.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9VVI|1|a|G|2209
9VVI|1|a|U|2210
9VVI|1|a|A|2211
9VVI|1|a|A|2212
9VVI|1|a|U|2213
9VVI|1|a|C|2214
9VVI|1|a|C|2215
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: