HL_9VXM_005
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUCUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9VXM|1|A|A|1855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXM_005 not in the Motif Atlas
- Homologous match to HL_7A0S_018
- Geometric discrepancy: 0.1755
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9VXM|1|A|U|1847
9VXM|1|A|U|1848
9VXM|1|A|C|1849
9VXM|1|A|U|1850
9VXM|1|A|G|1851
9VXM|1|A|C|1852
9VXM|1|A|A|1853
9VXM|1|A|U|1854
9VXM|1|A|A|1855
9VXM|1|A|A|1856
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32m
- Chain E
- Large ribosomal subunit protein uL3m
- Chain M
- Large ribosomal subunit protein uL15m
- Chain S
- Large ribosomal subunit protein bL21m
- Chain o
- Large ribosomal subunit protein mL63
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