HL_9VXM_010

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUAG

Length

6 nucleotides

Bulged bases

9VXM|1|A|C|2036, 9VXM|1|A|A|2039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_010 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.513

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.3

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

9VXM|1|A|U|2035
9VXM|1|A|C|2036
9VXM|1|A|U|2037
9VXM|1|A|U|2038
9VXM|1|A|A|2039
9VXM|1|A|G|2040

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL15m