HL_9VXM_013
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAAAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXM_013 not in the Motif Atlas
- Homologous match to HL_7A0S_027
- Geometric discrepancy: 0.3023
- The information below is about HL_7A0S_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47171.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9VXM|1|A|G|2129
9VXM|1|A|A|2130
9VXM|1|A|A|2131
9VXM|1|A|A|2132
9VXM|1|A|A|2133
9VXM|1|A|A|2134
9VXM|1|A|A|2135
9VXM|1|A|C|2136
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL10m
- Chain N
- Large ribosomal subunit protein uL16m
- Chain R
- Large ribosomal subunit protein bL20m
- Chain S
- Large ribosomal subunit protein bL21m
- Chain Z
- Large ribosomal subunit protein uL30m
- Chain o
- Large ribosomal subunit protein mL63
- Chain r
- Large ribosomal subunit protein mL66
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