HL_9VXM_034

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_034 not in the Motif Atlas

Homologous match to HL_7A0S_062

Geometric discrepancy: 0.1242

The information below is about HL_7A0S_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9VXM|1|A|A|3081
9VXM|1|A|G|3082
9VXM|1|A|U|3083
9VXM|1|A|A|3084
9VXM|1|A|A|3085
9VXM|1|A|U|3086

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Ax

Transfer RNA; tRNA

Chain D

Large ribosomal subunit protein uL2m