HL_9VXM_036

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCACAA

Length

6 nucleotides

Bulged bases

9VXM|1|A|C|3157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_036 not in the Motif Atlas

Geometric match to HL_5FMZ_001

Geometric discrepancy: 0.1648

The information below is about HL_5FMZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21043.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

9VXM|1|A|U|3154
9VXM|1|A|C|3155
9VXM|1|A|A|3156
9VXM|1|A|C|3157
9VXM|1|A|A|3158
9VXM|1|A|A|3159

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3m

Chain L

Large ribosomal subunit protein uL14m

Chain O

Large ribosomal subunit protein bL17m

Chain Q

Large ribosomal subunit protein bL19m