HL_9VXM_053

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

9VXM|1|AA|A|1283, 9VXM|1|AA|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_053 not in the Motif Atlas

Geometric match to HL_9AXU_017

Geometric discrepancy: 0.3648

The information below is about HL_9AXU_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9VXM|1|AA|U|1281
9VXM|1|AA|G|1282
9VXM|1|AA|A|1283
9VXM|1|AA|U|1284
9VXM|1|AA|G|1285
9VXM|1|AA|A|1286
9VXM|1|AA|A|1287

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AB

Small ribosomal subunit protein uS2m

Chain AD

Small ribosomal subunit protein uS5m

Chain AE

Small ribosomal subunit protein bS6m

Chain AS

Small ribosomal subunit protein mS23