HL_9VXM_055

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UACCCCA

Length

7 nucleotides

Bulged bases

9VXM|1|AA|C|1376, 9VXM|1|AA|C|1377, 9VXM|1|AA|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_055 not in the Motif Atlas

Geometric match to HL_8CRE_220

Geometric discrepancy: 0.243

The information below is about HL_8CRE_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9VXM|1|AA|U|1373
9VXM|1|AA|A|1374
9VXM|1|AA|C|1375
9VXM|1|AA|C|1376
9VXM|1|AA|C|1377
9VXM|1|AA|C|1378
9VXM|1|AA|A|1379

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7m

Chain AG

Small ribosomal subunit protein uS9m

Chain AX

Small ribosomal subunit protein mS29