HL_9VXM_056
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAACUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXM_056 not in the Motif Atlas
- Geometric match to HL_4WJ4_003
- Geometric discrepancy: 0.1831
- The information below is about HL_4WJ4_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9VXM|1|AA|A|1399
9VXM|1|AA|U|1400
9VXM|1|AA|G|1401
9VXM|1|AA|A|1402
9VXM|1|AA|A|1403
9VXM|1|AA|A|1404
9VXM|1|AA|C|1405
9VXM|1|AA|U|1406
9VXM|1|AA|U|1407
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AK
- Small ribosomal subunit protein uS14m
- Chain AZ
- Small ribosomal subunit protein mS33
- Chain m
- Large ribosomal subunit protein mL55
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