HL_9VXM_058

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

9VXM|1|AA|C|1525, 9VXM|1|AA|U|1526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_058 not in the Motif Atlas

Geometric match to HL_7ENI_002

Geometric discrepancy: 0.1957

The information below is about HL_7ENI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21043.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

9VXM|1|AA|U|1522
9VXM|1|AA|A|1523
9VXM|1|AA|A|1524
9VXM|1|AA|C|1525
9VXM|1|AA|U|1526
9VXM|1|AA|A|1527
9VXM|1|AA|A|1528

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AV

Small ribosomal subunit protein mS27