HL_9VXN_021

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9VXN|1|L5|U|1596, 9VXN|1|L5|A|1600, 9VXN|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|A|1593
9VXN|1|L5|C|1594
9VXN|1|L5|G|1595
9VXN|1|L5|U|1596
9VXN|1|L5|G|1597
9VXN|1|L5|C|1598
9VXN|1|L5|A|1599
9VXN|1|L5|A|1600
9VXN|1|L5|A|1601
9VXN|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22

Chain Lj

Large ribosomal subunit protein eL37