HL_9VXN_028

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

UAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAA

Length

70 nucleotides

Bulged bases

9VXN|1|L5|A|1960, 9VXN|1|L5|G|1975, 9VXN|1|L5|A|1984, 9VXN|1|L5|G|1988, 9VXN|1|L5|U|1992, 9VXN|1|L5|U|1997, 9VXN|1|L5|G|2000, 9VXN|1|L5|U|2004, 9VXN|1|L5|U|2006, 9VXN|1|L5|G|2007, 9VXN|1|L5|A|2009, 9VXN|1|L5|C|2011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|U|1957
9VXN|1|L5|A|1958
9VXN|1|L5|U|1959
9VXN|1|L5|A|1960
9VXN|1|L5|G|1961
9VXN|1|L5|A|1962
9VXN|1|L5|C|1963
9VXN|1|L5|A|1964
9VXN|1|L5|G|1965
9VXN|1|L5|C|1966
9VXN|1|L5|A|1967
9VXN|1|L5|G|1968
9VXN|1|L5|G|1969
9VXN|1|L5|A|1970
9VXN|1|L5|C|1971
9VXN|1|L5|G|1972
9VXN|1|L5|G|1973
9VXN|1|L5|U|1974
9VXN|1|L5|G|1975
9VXN|1|L5|G|1976
9VXN|1|L5|C|1977
9VXN|1|L5|C|1978
9VXN|1|L5|A|1979
9VXN|1|L5|U|1980
9VXN|1|L5|G|1981
9VXN|1|L5|G|1982
9VXN|1|L5|A|1983
9VXN|1|L5|A|1984
9VXN|1|L5|G|1985
9VXN|1|L5|U|1986
9VXN|1|L5|C|1987
9VXN|1|L5|G|1988
9VXN|1|L5|G|1989
9VXN|1|L5|A|1990
9VXN|1|L5|A|1991
9VXN|1|L5|U|1992
9VXN|1|L5|C|1993
9VXN|1|L5|C|1994
9VXN|1|L5|G|1995
9VXN|1|L5|C|1996
9VXN|1|L5|U|1997
9VXN|1|L5|A|1998
9VXN|1|L5|A|1999
9VXN|1|L5|G|2000
9VXN|1|L5|G|2001
9VXN|1|L5|A|2002
9VXN|1|L5|G|2003
9VXN|1|L5|U|2004
9VXN|1|L5|G|2005
9VXN|1|L5|U|2006
9VXN|1|L5|G|2007
9VXN|1|L5|U|2008
9VXN|1|L5|A|2009
9VXN|1|L5|A|2010
9VXN|1|L5|C|2011
9VXN|1|L5|A|2012
9VXN|1|L5|A|2013
9VXN|1|L5|C|2014
9VXN|1|L5|U|2015
9VXN|1|L5|C|2016
9VXN|1|L5|A|2017
9VXN|1|L5|C|2018
9VXN|1|L5|C|2019
9VXN|1|L5|U|2020
9VXN|1|L5|G|2021
9VXN|1|L5|C|2022
9VXN|1|L5|C|2023
9VXN|1|L5|G|2024
9VXN|1|L5|A|2025
9VXN|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

Large ribosomal subunit protein eL20

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein