HL_9VXN_031

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXN_031 not in the Motif Atlas

Homologous match to HL_8GLP_033

Geometric discrepancy: 0.0369

The information below is about HL_8GLP_033

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9VXN|1|L5|A|2376
9VXN|1|L5|C|2377
9VXN|1|L5|G|2378
9VXN|1|L5|A|2379
9VXN|1|L5|G|2380
9VXN|1|L5|A|2381
9VXN|1|L5|A|2382
9VXN|1|L5|C|2383
9VXN|1|L5|U|2384

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22

Chain LR

Large ribosomal subunit protein eL19

Chain Ld

Large ribosomal subunit protein eL31