HL_9VXN_033

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXN_033 not in the Motif Atlas

Homologous match to HL_8GLP_035

Geometric discrepancy: 0.0358

The information below is about HL_8GLP_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9VXN|1|L5|C|2458
9VXN|1|L5|G|2459
9VXN|1|L5|A|2460
9VXN|1|L5|G|2461
9VXN|1|L5|C|2462
9VXN|1|L5|G|2463

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein eL15

Chain Lj

Large ribosomal subunit protein eL37