HL_9VXN_104

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXN_104 not in the Motif Atlas

Geometric match to HL_8GLP_113

Geometric discrepancy: 0.1008

The information below is about HL_8GLP_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9VXN|1|S2|C|1460
9VXN|1|S2|G|1461
9VXN|1|S2|U|1462
9VXN|1|S2|U|1463
9VXN|1|S2|C|1464
9VXN|1|S2|A|1465
9VXN|1|S2|G|1466

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein eS17

Chain Sg

Small ribosomal subunit protein RACK1