HL_9VXN_112

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

CCGAAGGUAG

Length

10 nucleotides

Bulged bases

9VXN|1|v|A|16, 9VXN|1|v|A|17, 9VXN|1|v|G|18, 9VXN|1|v|G|19, 9VXN|1|v|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXN_112 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.2492

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9VXN|1|v|C|13
9VXN|1|v|C|14
9VXN|1|v|G|15
9VXN|1|v|A|16
9VXN|1|v|A|17
9VXN|1|v|G|18
9VXN|1|v|G|19
9VXN|1|v|U|20
9VXN|1|v|A|21
9VXN|1|v|G|22

Current chains

Chain v

P/E-tRNA

Nearby chains