HL_9WNR_001

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

9WNR|1|A|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_001 not in the Motif Atlas

Homologous match to HL_6CZR_072

Geometric discrepancy: 0.1746

The information below is about HL_6CZR_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.4

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9WNR|1|A|U|12
9WNR|1|A|U|13
9WNR|1|A|U|14
9WNR|1|A|G|15
9WNR|1|A|A|16
9WNR|1|A|U|17
9WNR|1|A|C|18
9WNR|1|A|A|19
9WNR|1|A|U|20
9WNR|1|A|G|21
9WNR|1|A|G|22

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain L

Small ribosomal subunit protein uS12