HL_9WNR_008

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2495

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9WNR|1|A|A|320
9WNR|1|A|A|321
9WNR|1|A|C|322
9WNR|1|A|U|323
9WNR|1|A|G|324
9WNR|1|A|A|325
9WNR|1|A|G|326
9WNR|1|A|A|327
9WNR|1|A|C|328
9WNR|1|A|A|329
9WNR|1|A|C|330
9WNR|1|A|G|331
9WNR|1|A|G|332
9WNR|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20