HL_9WNR_018

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

9WNR|1|A|C|841, 9WNR|1|A|U|842, 9WNR|1|A|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_018 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.3796

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

9WNR|1|A|C|840
9WNR|1|A|C|841
9WNR|1|A|U|842
9WNR|1|A|U|843
9WNR|1|A|G|844
9WNR|1|A|A|845
9WNR|1|A|G|846

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain R

30S ribosomal protein S18