HL_9WNR_035
3D structure
- PDB id
- 9WNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GUUCGAGUC
- Length
- 9 nucleotides
- Bulged bases
- 9WNR|1|X|C|56, 9WNR|1|X|G|57, 9WNR|1|X|G|59, 9WNR|1|X|U|60
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WNR_035 not in the Motif Atlas
- Homologous match to HL_4MGN_004
- Geometric discrepancy: 0.418
- The information below is about HL_4MGN_004
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9WNR|1|X|G|53
9WNR|1|X|U|54
9WNR|1|X|U|55
9WNR|1|X|C|56
9WNR|1|X|G|57
9WNR|1|X|A|58
9WNR|1|X|G|59
9WNR|1|X|U|60
9WNR|1|X|C|61
Current chains
- Chain X
- E-tRNA
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: