HL_9WNR_036
3D structure
- PDB id
- 9WNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9WNR|1|Y|C|16, 9WNR|1|Y|C|17, 9WNR|1|Y|G|19, 9WNR|1|Y|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WNR_036 not in the Motif Atlas
- Homologous match to HL_3AKZ_010
- Geometric discrepancy: 0.2042
- The information below is about HL_3AKZ_010
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9WNR|1|Y|C|13
9WNR|1|Y|A|14
9WNR|1|Y|G|15
9WNR|1|Y|C|16
9WNR|1|Y|C|17
9WNR|1|Y|U|18
9WNR|1|Y|G|19
9WNR|1|Y|G|20
9WNR|1|Y|U|21
9WNR|1|Y|A|22
9WNR|1|Y|G|23
Current chains
- Chain Y
- P-tRNA(PRO), A-tRNA(PRO)
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
Coloring options: