HL_9WNR_053

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

9WNR|1|b|U|321, 9WNR|1|b|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_053 not in the Motif Atlas

Geometric match to HL_8B0X_042

Geometric discrepancy: 0.1339

The information below is about HL_8B0X_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9WNR|1|b|G|319
9WNR|1|b|A|320
9WNR|1|b|U|321
9WNR|1|b|A|322
9WNR|1|b|C|323

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4