HL_9WNR_055

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9WNR|1|b|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_055 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3501

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9WNR|1|b|A|382
9WNR|1|b|C|383
9WNR|1|b|A|384
9WNR|1|b|C|385
9WNR|1|b|G|386
9WNR|1|b|U|387
9WNR|1|b|G|388
9WNR|1|b|G|389
9WNR|1|b|U|390
9WNR|1|b|A|391
9WNR|1|b|U|392

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain X

Transfer RNA; tRNA