HL_9WNR_064

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_064 not in the Motif Atlas

Geometric match to HL_8B0X_052

Geometric discrepancy: 0.1788

The information below is about HL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9WNR|1|b|G|712
9WNR|1|b|G|713
9WNR|1|b|U|714
9WNR|1|b|A|715
9WNR|1|b|A|716
9WNR|1|b|C|717
9WNR|1|b|A|718
9WNR|1|b|C|719

Current chains

Chain b

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain O

30S ribosomal protein S15